After scrolling through the GuzziDiag page i found out that he had a S2R1000 DP ecu.xdf file.....    I will be playing with it later today. I shall report back.

Success, I made a copy of my ECU's bin file with the Guzzi reader than opened it with the S2R 1000 DP .xdf file and disabled the lambdas. Runs like butter now..  . I'll have to make another tutorial as this one is pretty useless now.

Reviving a dead thread here, I know...

Any current sources for the software discussed here? Both links are dead as can be.

Edit:

Found it!

http://jpdiag.akress.com/

Bring out your dead...
Just got hooked up with JPDiag using the Fiat connector and a KKL 409 FT chipped OBD2 connector on my 06 S2R 800.
Waiting on my license now.
Can someone tell me what the ECU virginity check does and where I get the 5 numbers to enter on that screen.
Cheers